These software tools were developed by, or in collabaration with, the Tyson Lab.
- a joint effort by
members of the Departments of Biology and
Computer Science at Virginia Tech. The
goal is to advance the state of the art for modeling in Systems Biology.
PET - The parameter estimation toolkit
provides a graphical user interface for discovering rate constants of molecular
network models, that fit experimental data.
Oscill8 - A suite of tools for
analyzing large systems of ODEs, particularly with respect to understanding how
the high dimensional parameter space controls the dynamics of the system. Some
key features are: bifurcation diagrams, bifurcation searching, and parameter
Labnotes - A program that allows user
to extract numerical values of data from graphs in a pdf file.
Need Adobe Pdf Reader to work.