## Set file for C:\Mathprgm\ODEFILES\spring20\budmbc20.ode on Wed Mar 21 15:13:29 2001
16   Number of equations and auxiliaries
73   Number of parameters
# Numerical stuff
1    nout
40    nullcline mesh
9   Stiff
500  total
0.05  DeltaT
0  T0
0  Transient
100  Bound
1e-012  DtMin
1  DtMax
1e-005  Tolerance
0.001  Abs. Tolerance
0  Max Delay
100   Eigenvector iterates
0.001  Eigenvector tolerance
0.001  Newton tolerance
0  Poincare plane
1e-005  Boundary value tolerance
1e-005  Boundary value epsilon
20   Boundary value iterates
0   Poincare None
1   Poincare variable
1   Poincare sign
0   Stop on Section
0   Delay flag
500  Current time
500  Last Time
0   MyStart
1   INFLAG
# Delays
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
# Bndry conds
0
0
0
0
0
0
0
0
0
0
0
0
0
0
# Old ICs
0.0078  CLN2
0.2342  CLB2T
0.0614  CLB5T
0.1231  SIC1T
0.079  C2
0.0207  C5
0.8332000000000001  CDC20T
0.6848  CDC20
0.9946  HCT
0.6608000000000001  MASS
0  ORI
0  BUD
0  SPN
0.1  VI20
# Ending  ICs
0.01726880142574636  CLN2
0.0009661916843721282  CLB2T
0.05345636675574005  CLB5T
1.048692014000681  SIC1T
0.0009273749487811326  C2
0.05323468347654059  C5
0.068151529929766  CDC20T
0.05810208693338053  CDC20
0.9957900908265846  HCT
0.963332512275469  MASS
0.007763836421122674  ORI
0.07161301766760014  BUD
0.000754287859664576  SPN
0.1  VI20
# Parameters
0.0027  BCK0
0.02  CLN3MAX
1  Dn3
0  ksn2'
0.05  ksn2"
0.1  kdn2
0.002  ksb2'
0.05  ksb2"
0.01  kdb2'
2  kdb2"
0.05  kdb2p
0.006  ksb5'
0.02  ksb5"
0.1  kdb5'
0.25  kdb5"
0.02  ksc1'
0.1  ksc1"
0.01  kd1c1
0.3  kd2c1
50  kasb2
0.05  kdib2
50  kasb5
0.05  kdib5
0.005  ks20'
0.06  ks20"
0.08  kd20
1  ka20
0.1  ki20'
10  ki20"
0.04  kat1'
2  kat1"
0  kit1'
0.64  kit1"
2  ksori
0.06  kdori
0.3  ksbud
0.06  kdbud
0.08  ksspn
0.06  kdspn
1  kasbf
0.5  kisbf'
6  kisbf"
1  kamcm
0.15  kimcm
1  kaswi
0.3  kiswi'
0.2  kiswi"
6  Jn3
0.05  Jd2c1
0.05  Jat1
0.05  Jit1
0.2  Jspn
0.01  Jasbf
0.01  Jisbf
1  Jamcm
1  Jimcm
0.1  Jaswi
0.1  Jiswi
20  ec1n3
2  ec1k2
1  ec1b5
0.067  ec1b2
1  eit1n2
0.5  eit1b5
1  eit1b2
0.4  eorib2
1  ebudb5
75  esbfn3
0.5  esbfb5
0.005776  mu
0.433  f
0.3  Thres1
0.2  Thres
# Graphics
0.7071097251469876  rm
-0.4999999999826661  rm
0.4999958366025516  rm
0.7071038372138505  rm
0.5000041633974482  rm
-0.4999999999826661  rm
0  rm
0.7071038372138505  rm
0.7071097251469876  rm
0    
10    
2    
1    
0    
0    
2    
2    
1    
2    
0    
3    
2    
1    
6    
0    
4    
2    
1    
9    
0    
8    
2    
1    
11    
0    
1    
2    
1    
8    
0    
9    
2    
1    
10    
0    
9    
2    
1    
10    
0    
10    
2    
1    
0    
0    
10    
2    
1    
0    
-1000   
1000   
0    
0   3DFlag
1   Timeflag
0   Colorflag
0   Type
1  color scale
0   minscale
500   xmax
0   xmin
2   ymax
0   ymin
12   zmax
-12   zmin
250   
0.004   
1   
1   
0   
0.08333333333333333   
45   Theta
45   Phi
0    xshft
0    yshft
0    zshft
0   xlo
0   ylo
0   
0   
500   xhi
2   yhi
500   
2   
RHS etc ...
dCLN2/dT= (KSN2'+ KSN2"*SBF)*MASS - KDN2*CLN2  
dCLB2T/dT= (KSB2'+ KSB2"*MCM)*MASS - VDB2*CLB2T  
dCLB5T/dT= (KSB5'+ KSB5"*SBF)*MASS - VDB5*CLB5T  
dSIC1T/dT= (KSC1'+ KSC1"*SWI) - (KD1C1 + VD2C1/(JD2C1+SIC1T))*SIC1T  
dC2/dT= KASB2*CLB2*SIC1 - (KDIB2 + VDB2 + KD1C1 + VD2C1/(JD2C1+SIC1T))*C2  
dC5/dT= KASB5*CLB5*SIC1 - (KDIB5 + VDB5 + KD1C1 + VD2C1/(JD2C1+SIC1T))*C5  
dCDC20T/dT= (KS20' + KS20"*CLB2) - KD20*CDC20T   
dCDC20/dT= KA20*(CDC20T-CDC20) - (VI20 + KD20)*CDC20  
dHCT/dT= (KAT1'+KAT1"*CDC20)*(1-HCT)/(JAT1+1-HCT)-VIT1*HCT/(JIT1+HCT)  
dMASS/dT= MU*MASS  
dORI/dT= KSORI*(CLB5 + EORIB2*CLB2) - KDORI*ORI    
dBUD/dT= KSBUD*(CLN2 + CLN3 + EBUDB5*CLB5) - KDBUD*BUD  
dSPN/dT= KSSPN*CLB2/(JSPN+CLB2) - KDSPN*SPN  
dVI20/dT= 0  
CLB5=CLB5  
SIC1=SIC1  

where ...
CLB2 =  CLB2T - C2   
CLB5 =  CLB5T - C5   
SIC1 =  SIC1T - C2 -C5   
BCK2 =  BCK0*MASS   
CLN3 =  CLN3MAX*DN3*MASS/(JN3+DN3*MASS)   
SBF =   GK(VASBF, KISBF'+KISBF"*CLB2, JASBF, JISBF)   
MCM =   GK(KAMCM*CLB2, KIMCM, JAMCM, JIMCM)   
SWI =   GK(KASWI*CDC20, KISWI'+KISWI"*CLB2, JASWI, JISWI)   
VDB2 =  KDB2'*(1-HCT) + KDB2"*HCT +KDB2P*CDC20   
VDB5 =  KDB5'+ KDB5"*CDC20   
VD2C1 =  KD2C1*(EC1N3*CLN3+EC1K2*BCK2+CLN2+EC1B5*CLB5+EC1B2*CLB2)   
VIT1 =  KIT1'+ KIT1"*(CLN3 + EIT1N2*CLN2 + EIT1B5*CLB5 + EIT1B2*CLB2)   
VASBF = KASBF*(CLN2+ESBFN3*(CLN3+BCK2)+ESBFB5*CLB5)   

User-defined functions:
BB(VA,VI,JA,JI) =  VI-VA+JA*VI+JI*VA  
GK(VA,VI,JA,JI) =  2*JI*VA/(BB(VA,VI,JA,JI)+SQRT(BB(VA,VI,JA,JI)^2-4*(VI-VA)*JI*VA))