Software
These software tools were developed by, or in collabaration with, the Tyson Lab.
![JigCell](image/buttons/jigcell.png)
JigCell - a joint effort by members of the Departments of Biology and Computer Science at Virginia Tech. The goal is to advance the state of the art for modeling in Systems Biology.
![PET](image/buttons/pet.png)
PET - The parameter estimation toolkit provides a graphical user interface for discovering rate constants of molecular network models, that fit experimental data.
![Oscill8](image/buttons/oscill8.png)
Oscill8 - A suite of tools for analyzing large systems of ODEs, particularly with respect to understanding how the high dimensional parameter space controls the dynamics of the system. Some key features are: bifurcation diagrams, bifurcation searching, and parameter sweeping.
![Labnotes](image/buttons/labnotes.png)
Labnotes - A program that allows user to extract numerical values of data from graphs in a pdf file. Need Adobe Pdf Reader to work.