Modeling the Budding Yeast Cell Cycle

• Home
• Introduction
• Rationale
• Budding yeast biology
• Components & function
• Cell cycle progression
• Basic mechanism
• Major improvement
• Overview
• Wiring diagram
• Description
• Justification
• Cyclins
• Cdc20
• Cdh1
• Cdc14 activation
• Mitotic Exit Network
• Pds1/Esp1 interaction
• CKI
• Checkpoint proteins
• Formulation
• Simulation
• Conclusions
• Mathematical Model
• Equations
• Parameters
• Problems
• Predictions
• Robustness
• Mutants
• List of Mutants
• WT in glucose
• WT in galactose
• Cln
• Bck2
• cln1 cln2 cln3
• Clb5 Clb6
• Clb1 Clb2
• Sic1
• Cdc6
• Cdh1
• Cdc20
• APC
• MEN pathway
• Exit-of-mitosis
• Pds1 / Esp1
• Checkpoint
• PPX
• Model Downloads
• Previous model
• Current model
• Target model
• APC-del model
• Modeling Tools
• Get WinPP
• How to use WinPP
• JigCell
• Oscill8
• PET
• Simulate the Model
• Other Models
• The "target" model
• "APC-del" model
• Generic model
• Literature
• References
• Publications
• Who We Are
• Va Tech
• BUTE
• Rockefeller Univ.

Get WINPP - How to run the models yourself

Download WinPP (Windows version) or XPP.

To simulate the model using WinPP or XPP, save the ode and set files on your computer. When it is available on your computer, open WinPP and follow the steps on "How to use WinPP".